Scaffold Ga0154007_1008244

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0154007_1008244

Scaffold Ga0154007_1008244

Overview

Basic Information
Taxon OID	3300012054 Open in IMG/M
Scaffold ID	Ga0154007_1008244 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC091 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2120
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: Connecticut, Klassen Lab
Coordinates	Lat. (^o)	41.8102	Long. (^o)	-72.2564	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000383	Metagenome	1208	Y
F016627	Metagenome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0154007_10082441	F016627	N/A	VMKQEVKPSQMQGPASLTTVKFLGRHEILEVLVVGPDFHRMGRSF*
Ga0154007_10082443	F000383	N/A	LFLSHHAASFTARRASVHLYFSGLPIDLWVVVLEPGITEDHVLLPEAGDSEECSFGVGFVAEDYVYNFGDPACFVGGAVHVVHWYGARDAPSINTFHPYKVSIYEVARSSRVQKRFNGVYLTGVCGADFYWEDDRRSAGVKGIDGESFG*

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