Scaffold Ga0154007_1006270

Overview

Basic Information

• Taxon OID: 3300012054
• Scaffold ID: Ga0154007_1006270
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC091 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2520
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Connecticut, Klassen Lab
• Coordinates
  • Lat. (^o): 41.8102
  • Long. (^o): -72.2564

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013385	Metagenome	271	Y
F032107	Metagenome	180	Y
F049333	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0154007_10062703	F032107	AGG	LSTSLMPHGPNHGTAESSSEIEGGSAVAGTCDTLVICDSDNSVTHDHDHLHQASQPVTSNIVTYDCDLWDGEHHVTSLSGHFGYLENDTKVLASSVLRIAYFIQKHPIGSRPIE*
Ga0154007_10062704	F013385	N/A	MLIPLAPRLPLLVLVSFQTHSILFLVPALGLVNAFIPEDALVLVALSDAPPGVSQLLRTLGKHLLSPLLPLRRRKVKRRRLVLAPGHLLPLGLLQANSLTELPLSSSLLLPLPLLLKGEHILRVGMTKFLLRRAGALLLG*
Ga0154007_10062705	F049333	N/A	LAVAVLAGRGGGGALNTTGARVGTFWEGAERLVEGGTLPLSLVFLLVTIVKGASSTAG*