NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0154007_1006270

Scaffold Ga0154007_1006270


Overview

Basic Information
Taxon OID3300012054 Open in IMG/M
Scaffold IDGa0154007_1006270 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from North Carolina, USA - TSNC091 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2520
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Connecticut, Klassen Lab
CoordinatesLat. (o)41.8102Long. (o)-72.2564Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013385Metagenome271Y
F032107Metagenome180Y
F049333Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0154007_10062703F032107AGGLSTSLMPHGPNHGTAESSSEIEGGSAVAGTCDTLVICDSDNSVTHDHDHLHQASQPVTSNIVTYDCDLWDGEHHVTSLSGHFGYLENDTKVLASSVLRIAYFIQKHPIGSRPIE*
Ga0154007_10062704F013385N/AMLIPLAPRLPLLVLVSFQTHSILFLVPALGLVNAFIPEDALVLVALSDAPPGVSQLLRTLGKHLLSPLLPLRRRKVKRRRLVLAPGHLLPLGLLQANSLTELPLSSSLLLPLPLLLKGEHILRVGMTKFLLRRAGALLLG*
Ga0154007_10062705F049333N/ALAVAVLAGRGGGGALNTTGARVGTFWEGAERLVEGGTLPLSLVFLLVTIVKGASSTAG*

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