Scaffold Ga0154007_1004936

Overview

Basic Information

• Taxon OID: 3300012054
• Scaffold ID: Ga0154007_1004936
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC091 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2906
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricineae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Connecticut, Klassen Lab
• Coordinates
  • Lat. (^o): 41.8102
  • Long. (^o): -72.2564

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000383	Metagenome	1208	Y
F023765	Metagenome	208	Y
F038021	Metagenome	166	Y
F058578	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0154007_10049362	F058578	GGAG	LEEDEAPIQTCEAEYKLGDQLFMTRILPNSTAEDLHAISTTSQKLAEGVCQSAKAQKEPFILPNCIRGFESVFAKEDFDVLPEHRQ*
Ga0154007_10049363	F000383	N/A	LFLSYYTASFASRRTSVHLHFSGLSIDLQVVVLEPGITEDHVLPSEARDSEEHPFGVGFVTENHVYYFRDLTCLIGGAVHVVYWYGARNAPGVNAFHSDKVSIYEVAHSPRVQKHLDGIHLADVCGADFYWQDD*
Ga0154007_10049366	F038021	N/A	MLYLRLAPEQFTYDKEKIFWTLAFFKDRYVAKWSENLFCQEMDTGIFPIRS*
Ga0154007_10049367	F023765	N/A	MQELRKARLELCSPEKSGGEESFGLIRYLDGVDRTGKGELIGGRDVGIGGGATVGVGAVMS*