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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012054 Open in IMG/M |
| Scaffold ID | Ga0154007_1000305 Open in IMG/M |
| Source Dataset Name | Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC091 MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8578 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (53.85%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Connecticut, Klassen Lab | |||||||
| Coordinates | Lat. (o) | 41.8102 | Long. (o) | -72.2564 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000523 | Metagenome | 1050 | Y |
| F004107 | Metagenome | 452 | Y |
| F017427 | Metagenome | 240 | Y |
| F022328 | Metagenome | 214 | Y |
| F029616 | Metagenome | 187 | Y |
| F093009 | Metagenome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0154007_100030510 | F000523 | N/A | VIAKPERRLQQTVKDVGAENDLLNDLGFNLCIAPWSPVMRLVMYFRVVEVVKTKVLSG* |
| Ga0154007_100030513 | F093009 | GAG | MILEVIGVLGPGLTSSSLLSASSEKEEGLEDAFLESSAAEILLEEHLIVQ* |
| Ga0154007_10003055 | F029616 | N/A | MEIFFQIDLEVVRMVGSECFCFGLAKDICVLVIFLWNGGEVDFFEDGSGFGLYCETELDSKYF* |
| Ga0154007_10003056 | F004107 | AGG | LGLDRDVSDGVNCRGFSTGENRGFTKVSTEGTEARLWSKDGGRKDIDPETQSINRL* |
| Ga0154007_10003057 | F017427 | AGAAG | MYSPEGNFTGNDTTSEIILFKVPSNRHSFIGRVGVVGRECPQVKAESKKQCVDLESTSIQMGIG* |
| Ga0154007_10003058 | F022328 | GAGG | VDGDGDLTMEDGRLESFWELQDGTVCGGVVDDWGQDGAELCKEVEN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |