Scaffold Ga0154007_1000262

Overview

Basic Information

• Taxon OID: 3300012054
• Scaffold ID: Ga0154007_1000262
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC091 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8938
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Connecticut, Klassen Lab
• Coordinates
  • Lat. (^o): 41.8102
  • Long. (^o): -72.2564

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000383	Metagenome	1208	Y
F016627	Metagenome	245	Y
F023765	Metagenome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0154007_100026212	F000383	AGAAGG	LVHLYFSGLPIDLWVVVLEPGITKDHVLPSEAGDSEECSFRVGFVMENYVYHFRDLTCLIEGAIHIVHQYGARDALGVNAFCSNEVSIYEVARSSGVQKRLDRMHLAGVCGADFYWQDD*
Ga0154007_100026216	F016627	N/A	MSRAVMKQEVESSQIQGPMSLATVKFFGRHEIFKVFVVGPDFHWMGRSFQKVPLLF*
Ga0154007_10002628	F023765	N/A	VQELRKAHPELCSPEKSGGKGSFGLVCCLDGADRTRERGLTEGGDVGIGGGATVGAGAVMS*