Scaffold Ga0154007_1000210

Overview

Basic Information

• Taxon OID: 3300012054
• Scaffold ID: Ga0154007_1000210
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC091 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9347
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Connecticut, Klassen Lab
• Coordinates
  • Lat. (^o): 41.8102
  • Long. (^o): -72.2564

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000977	Metagenome	815	Y
F003619	Metagenome	476	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0154007_10002103	F000977	AGCAG	MTSRQQIKSLSVTSDPITAGLSQEMDALPDDNHIADARSHWHVFLSHIQSRRKLVRSLENGGQK*
Ga0154007_10002104	F003619	GAGG	VNVFYHIPYSFMRQDAAVAWTTFYGVADLKSLASYQLRSYHIYKVWYGGVDEGLIECGKAHEWFTGYSTSELVTVCKGRHLRDTMWIGSRSSPYHSFYT*
Ga0154007_10002106	F003619	GAGG	VNVSYHISYSFIRQNAAVTWTTFYGVAGLKSLANHRLRLYHTYKVWCGGVDEGLIECGKAHEWFTDYSTSELVTVCKGEHLKDTMRIGSRLSSHYPFYT*
Ga0154007_10002107	F000977	GAG	MTSRQQIKSLSVTSDFITARLSQKIDALLDNNCIADAQAHCYVFLDHIWSRRKLVWDSENDRQK*