Scaffold Ga0154007_1000071

Overview

Basic Information

• Taxon OID: 3300012054
• Scaffold ID: Ga0154007_1000071
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC091 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12585
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (41.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Connecticut, Klassen Lab
• Coordinates
  • Lat. (^o): 41.8102
  • Long. (^o): -72.2564

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000383	Metagenome	1208	Y
F005168	Metagenome	409	Y
F029613	Metagenome	187	Y
F040415	Metagenome	161	Y
F049332	Metagenome	146	Y
F057804	Metagenome	135	Y
F089631	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0154007_100007110	F005168	AGG	MLVKVLIRKRRRRVKAKSTREIINYPRTRGKKRIERIEVAFNTIELLIDILDRALEVGLLFFSEFGSCGFVKDLIFSMLRI*
Ga0154007_100007113	F057804	GGA	MGISLDGVGRGGGGLGKTEDRAAGGEQSIEKGVGQAGAKHAGVMVVDQNVDWNALFANHAWSILWAAMYQTSRSVSAGCPKGMVAI*
Ga0154007_100007115	F000383	N/A	LFLSYHTVSFASRRALVYLHFSGLLIDLQVVVLEPGITKDHILPSEAGDSEECPFRVGFVTENYIYHFRDLTCLVGGAVYVVHWYGARDALGVNTFRLDKVSIYEVACSSRVQKHLDGMHLAGICGADFY*
Ga0154007_100007116	F049332	GGA	METRALNVCWSGPPLEYVEDLEEDKAPIWTHEAEYEPGDRLFMTRILPESTAEDLHAISTTSWKLAEGACRSAEV*
Ga0154007_100007121	F029613	GGGGG	MCERSPYIYPPFKVAASRSNSSGIENGVEVCLVDVSWGGWVLPIVLYNEVWYLDIRGYLLRVVFFTKTLPLDQELEPPPVPATI*
Ga0154007_100007122	F040415	N/A	VNEAVDNDVAWSHRGVIPITFHDNVFSSLNLSFATGATGGEMREESLSVLSNRGMTSSHAGEVST*
Ga0154007_10000719	F089631	GGAGG	VIGMRSAIALMLLDGEVWKAPVIQRTALCCIFFNLVMFLTIGASLKNYS*