Scaffold Ga0154007_1000023

Overview

Basic Information

• Taxon OID: 3300012054
• Scaffold ID: Ga0154007_1000023
• Source Dataset Name: Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC091 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16771
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Connecticut, Klassen Lab
• Coordinates
  • Lat. (^o): 41.8102
  • Long. (^o): -72.2564

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000523	Metagenome	1050	Y
F004107	Metagenome	452	Y
F022328	Metagenome	214	Y
F026755	Metagenome	196	Y
F067284	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0154007_100002315	F004107	GAG	LGLDGDVSDGVNCRGFSAGENGGFTKVSTGGTEAGLWSKDGGRKDIDPETQSINGL*
Ga0154007_100002318	F022328	GAGG	VDRDGDLTMEDGCLEGFRELRDGVVCGRVVDDWRQDRAELCEEAEY*
Ga0154007_100002319	F026755	N/A	MCYAPVSSCEIGRVFQSNGSRRDRGPKRSSGGVRKDKIRLGLIDVNLQTEELHCNYSVLIRSLE*
Ga0154007_10000236	F000523	N/A	VIAKSERRLWRTIKDIGAENDLLNDLGFNLCVAPQSPVMRLVTYFRVVEAVKTEVLSDQVEESERIRYD*
Ga0154007_10000238	F067284	AGG	MARRSNVRKVKQQMDVEWKAEILRKLNGLSELSGMRKDIWRIVVALEKLAGMENEDSNEE