NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0154007_1000019

Scaffold Ga0154007_1000019


Overview

Basic Information
Taxon OID3300012054 Open in IMG/M
Scaffold IDGa0154007_1000019 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from North Carolina, USA - TSNC091 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17003
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (52.17%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Connecticut, Klassen Lab
CoordinatesLat. (o)41.8102Long. (o)-72.2564Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001569Metagenome669Y
F029614Metagenome187Y
F034778Metagenome173Y
F041522Metagenome159Y
F080718Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0154007_100001911F001569N/AMVLEPGVAEDHALLPEVRDGKERPFGVGLIMEDYIHHFRDLSCFVRGAVYVEHRYGMRDALGTNTFHMDKILVYEVAGGSGVQKCFDGMHLAGVGGTDLYRQDDRRFAGVKDVGRVSSGEFFFPIWASGAELSWPERRGREGVRL*
Ga0154007_100001915F041522GGCGGVFLVIFRDKVWRLDIGGHLSRVVLSAETFPLNQELEPPLVPVTIQYLLYLPFRFSVDNNRWRRGSWLPSWYRIVRSSRQLDHVEHWVQLSQSIRQLESVG*
Ga0154007_100001916F034778N/AVVGGAFQYVDCICFCINREEVKPELLLKISSGLDRENASVRFLMKHIFGLLGDMTSFEEHESPENPFFFVMELLRGQADVERAGVQKCMAVVMFSTEVWRTRELGTCSFRC*
Ga0154007_100001923F080718GGAMKDIVELHTSDVSRSPQVFAMELCCQFWCRDFRGRLPRIVFAAIPFLLDKILESSLVPTTVEYLLYFPLCFSVNDYGQWVVFCSPSCDWVFWGRSKLHYVKHWMELLYPVWQF*
Ga0154007_10000198F029614N/ALVVRGAFQSINGIRFCIDREELTPELLFEVGPRLDRENAGVHLLVKEVLRLPCGMSVFEKGECPKDFLLITAELLWSQA*
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