NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0154007_1000006

Scaffold Ga0154007_1000006


Overview

Basic Information
Taxon OID3300012054 Open in IMG/M
Scaffold IDGa0154007_1000006 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from North Carolina, USA - TSNC091 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22077
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricineae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Connecticut, Klassen Lab
CoordinatesLat. (o)41.8102Long. (o)-72.2564Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030624Metagenome184Y
F032495Metagenome179Y
F037000Metagenome168Y
F039422Metagenome163Y
F053687Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0154007_10000061F037000N/AMKTIRSRAKRLEIAASLYGPAKGSRAIHCLEKNPWSRIRGVGSGSQVIGRGVVSLFHSYYLWEFGSFLCFFSFVVSLLCNPNKIL*
Ga0154007_10000063F030624N/AVLLYFLKNPLHLSLDGNSSPNRLGHSLTLEVNSSLRVIGVGFQLYGQLRKNPHNSMGVLGSSVVSTASQTTRLGKGSSIMARDKCMF*
Ga0154007_100000633F039422GGAGVSVVPTSTGRSRKVLHTSKALIEKSLGSLFSYLGLQSGAVARGLRDCASTSSLSIVLESSIVNTVNLFTGDQGTLITSCVTQNPSLSGDQTPLTELHLSMPTNLQSTPPVAPK*
Ga0154007_100000635F032495N/AVVGGFFQSIDCVRFRVNREEVDLELLFKVPPGLDGENAGVRFLTKHVLRPLGGTTTFEEHEGLKDFLLFVVKLLQ*
Ga0154007_10000067F053687GAGVTLSLSLREVAIITGSLEKRPKETIDCLVRLKELFGSLGTGNPLKIGGGKASGLKDGGLSINISHETASHPEVRISLIITFSSE*
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