Scaffold Ga0136631_10001360

Overview

Basic Information

• Taxon OID: 3300012043
• Scaffold ID: Ga0136631_10001360
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ601 (22.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7887
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.1246
  • Long. (^o): 164.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016368	Metagenome / Metatranscriptome	247	Y
F025442	Metagenome	201	Y
F039477	Metagenome	163	Y
F054580	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136631_1000136011	F016368	AGGAGG	MSELVLLKAHKVNKVLPPGYRVDHDPDVAVLRRPDGSVVAYLPIWTMSPERILREAELDLASGDLAIDH*
Ga0136631_100013604	F025442	GGAGG	VKPQTTIQILRCLTLGRYTARVVDGRLETEGPQPLAGPLPASIKANRDELVAFLNEWADGVWPPAPGSGLREVEQRQGRGLGPALDAVEAALRRAA*
Ga0136631_100013608	F054580	GGAGG	MTKCSGITQAGTACKGTPIDGSQWCYVHHPDHAEERRRHSSKGGKRGGRGRPSVELARLQARFEELAEKVLSGEVERGVGAVAGQLLNGARACVRDGLAAREQEELIGRMEQLEEALEAKESRYGA*
Ga0136631_100013609	F039477	AGGAG	MGLRGKLRRLERGARANLASFVLEDGSRYYFNPISGECFLHSIDCLRSQGDCEPFPEPPETIKALTRARNRAAALEATCGGGFGLFPYEVEALVEYGELVPRSLVAGRELGEPLPDLSEP