NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136631_10001360

Scaffold Ga0136631_10001360


Overview

Basic Information
Taxon OID3300012043 Open in IMG/M
Scaffold IDGa0136631_10001360 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ601 (22.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7887
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.1246Long. (o)164.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016368Metagenome / Metatranscriptome247Y
F025442Metagenome201Y
F039477Metagenome163Y
F054580Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0136631_1000136011F016368AGGAGGMSELVLLKAHKVNKVLPPGYRVDHDPDVAVLRRPDGSVVAYLPIWTMSPERILREAELDLASGDLAIDH*
Ga0136631_100013604F025442GGAGGVKPQTTIQILRCLTLGRYTARVVDGRLETEGPQPLAGPLPASIKANRDELVAFLNEWADGVWPPAPGSGLREVEQRQGRGLGPALDAVEAALRRAA*
Ga0136631_100013608F054580GGAGGMTKCSGITQAGTACKGTPIDGSQWCYVHHPDHAEERRRHSSKGGKRGGRGRPSVELARLQARFEELAEKVLSGEVERGVGAVAGQLLNGARACVRDGLAAREQEELIGRMEQLEEALEAKESRYGA*
Ga0136631_100013609F039477AGGAGMGLRGKLRRLERGARANLASFVLEDGSRYYFNPISGECFLHSIDCLRSQGDCEPFPEPPETIKALTRARNRAAALEATCGGGFGLFPYEVEALVEYGELVPRSLVAGRELGEPLPDLSEP

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