Scaffold Ga0136627_1000291

Overview

Basic Information

• Taxon OID: 3300012042
• Scaffold ID: Ga0136627_1000291
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ489 (22.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17978
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (72.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0853
  • Long. (^o): 163.8049

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008258	Metagenome / Metatranscriptome	336	Y
F019957	Metagenome / Metatranscriptome	226	Y
F025631	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136627_100029113	F019957	N/A	MDTMLALSSNQTAWFLTLAVGLVVLLVVLALLEGLRRAVVGLEGHLWTTWVTGKEVVRHSATTYLLKNTRASGEELVEELGYHGQ*
Ga0136627_100029115	F025631	N/A	LALVGVPGGDRVITALSIWWTVGWIVGTVVVLLVAVLLLAITGLARKIQGEAQHLVTDLDSIATKTRPLHDVASTNAAVRAITRGLHGARGAAPALSRYRTSPGWRE*
Ga0136627_10002917	F008258	AGGA	VTQDPIEQAIEKLGSYGVPVNEIGERVGGLVGQLGALDPNDIMEQIGSIDPSQLDVGAMVGEAKARLDALDPALRVPLMVAAGFVGARVVRWIVR*