Scaffold Ga0137461_1000151

Overview

Basic Information

• Taxon OID: 3300012040
• Scaffold ID: Ga0137461_1000151
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT746_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15570
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (84.62%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9778
  • Long. (^o): -107.0025
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019807	Metagenome / Metatranscriptome	227	Y
F046228	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137461_100015126	F046228	AGGAGG	MKRSKLVKPVITAAGILALYGVGLAQSPSESHRAASARAHEILSSAPCPLPQVTKKKITEDQARDLAQGFADKNMSGFKVVRPLGYGGGYTTMCYQTVNP
Ga0137461_10001516	F019807	AGGAG	MNLSNRAVLAFSLGLTLTATVGCAGNNIALVGRDTLAPRAIQPVQNEILGTVERVNTGANEIFLRPAPGHPGMVSYSAETRVMYLGRVYPVSQLRFGDNVAMQMETDSRGNPHTHVIRLEKSAGDWAQRNN*