NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136559_1182247

Scaffold Ga0136559_1182247


Overview

Basic Information
Taxon OID3300012037 Open in IMG/M
Scaffold IDGa0136559_1182247 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #496
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)582
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010815Metagenome298Y
F017443Metagenome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0136559_11822471F017443N/APRWHFPSALSPEAHAEWGLYKILEYMGLHEILPPGAGKNRAKLRKDIEEYHTAYVIDFDDTDIDTFIARRPGGLAFDKEEKLCVFLEYTRAMDTNEDWAEKRWRKMTDIAPI*
Ga0136559_11822472F010815N/AQSVLEFNAIKKNLRIMSDIERVFWTVLFRMASRVFIFFTPSDSSLVRNWFVCSEPRTPVVKLV*

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