NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136600_1100746

Scaffold Ga0136600_1100746


Overview

Basic Information
Taxon OID3300012036 Open in IMG/M
Scaffold IDGa0136600_1100746 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #698
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)645
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001408Metagenome702Y
F002402Metagenome563Y

Sequences

Protein IDFamilyRBSSequence
Ga0136600_11007461F002402N/AMYYRGTKIECEAYNAIVTEGENYQGSTTSWANVTSNQNGQGFAILKHENYQSDMTLIDKIPDSWYNNLEI*
Ga0136600_11007462F001408N/AMKNYLKRTRHHLHAIVGITSGFITSLLLSWVWLGFRNLDSLDKAMWFLAPAFIIGLIWEWRQGIINNWDILVSGIAISTGVYLGGLLF*

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