Scaffold Ga0136600_1025303

Overview

Basic Information

• Taxon OID: 3300012036
• Scaffold ID: Ga0136600_1025303
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #698
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1477
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002737	Metagenome	533	Y
F040417	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136600_10253031	F040417	N/A	QHKSKHNRCCSKLIIEQGDYKMEQIDEVDSNERFQKEQEYIDALSTLNQQTCYSQFRDNYHRQYFLAHRTKTTCNCGGVYTYDHRARHFKSQKHVNFIGV*
Ga0136600_10253033	F002737	N/A	MEQVQIHISPAQLSKIKKGMPIQIKHGSMGNGDMVIALHPENAKKMASAFKRGKGLRIKMNEDEVRASGLLDGIKRLGKKAEKGIVDVGNKVAKPIKKGISQIPKPIRDVLQEEAQGLIDTTGTTLGMMIGKATGDEELGDMVQR