Scaffold Ga0136600_1007670

Overview

Basic Information

• Taxon OID: 3300012036
• Scaffold ID: Ga0136600_1007670
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #698
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3314
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Salicola phage CGphi29 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037512	Metagenome	167	Y
F050795	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136600_10076703	F050795	AGGTGG	MNKLEIPERFTGTVYVCMFSDPNSCLYGETFLSKFDPKGSSVSITLGKEDVDIALDRAGTLDKQVDQLRAARQKIIAKASGEARQIEEAIDSLLSIEHKEVEL*
Ga0136600_10076705	F037512	GGAG	MQDYRIIMLSTDPESAVQFVIYTRAATEREAVDVANQQFCPHFEADRAAVTGIMN*