Basic Information | |
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Taxon OID | 3300012036 Open in IMG/M |
Scaffold ID | Ga0136600_1000172 Open in IMG/M |
Source Dataset Name | Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #698 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 34585 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (85.71%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Rauer Islands | |||||||
Coordinates | Lat. (o) | -68.5558 | Long. (o) | 78.1913 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005498 | Metagenome | 398 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0136600_10001721 | F005498 | N/A | TQSNVNVSGNSTREYVGAFGPGGAVFTLNIGGNNGERWTVRADNGNLRIEIKGSAYVSGLSSDGVVGIRLPDGGTLGDHVLSSGTTDESASGSNTVNTGIGPLYIGQINDNAWGSAKFYGCTFIDKILTAQQRSDARQYYAEKRGVVL* |
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