NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136561_1038044

Scaffold Ga0136561_1038044


Overview

Basic Information
Taxon OID3300012031 Open in IMG/M
Scaffold IDGa0136561_1038044 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)763
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015885Metagenome / Metatranscriptome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0136561_10380442F015885N/AMACNKIAASILENCARIVPGIKDNAYLINFDDVDKDACGFDPDNPLLLTQLVLKTASPALTAFQMQGFNFSNEHKTEMVKKTYQKSWEHGFVFRIFDNTPEDKLWIKQATHSRFLIIQENNYNKSLSSPYGRTVFEVLGWDFGLEVNAAERDANSDELLGGWLITAG

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