Scaffold Ga0136561_1001279

Overview

Basic Information

• Taxon OID: 3300012031
• Scaffold ID: Ga0136561_1001279
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7335
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001894	Metagenome / Metatranscriptome	621	Y
F003482	Metagenome / Metatranscriptome	484	Y
F004242	Metagenome / Metatranscriptome	447	Y
F036509	Metagenome	169	N
F037002	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136561_100127911	F003482	N/A	MDLHDAKQQFEFKKSIKDTYSLIKRDTEHIPDLSTLDDDNKGQWVEHDDFAKVFDGLLDYCADEEYLDNLDWNSVNYQVYGKDYYEEKFPGFSDEVYEILAKSTEEENKVVDNRTPPLKITEGEFTINFD*
Ga0136561_10012793	F001894	N/A	MLNEKAKIANLHYLYADLPEEKAHKKASRRLSKLGYELDKKNTNKDVLTAIKGDNVHINYSGTNIRNPRDIISDIALATGVQRINPQFRERRQKTRSIMREYGDNKDYTLGGHSLGGSIALNNVSQSKSIRDRVSKVDVFNSGYTLPFHNSIKPTDKKIKRELDRKVNHHRVKGDLVSAYSHNDTAFGNLFEYKHKDNDADLSDKHSLETFMD*
Ga0136561_10012795	F036509	N/A	MWFKYIMSLHQLTTKLTPQQSNYIPAGKFIYTDETFLIKPPIDSRGEAYPRQGKPLVEHGFSYAHHNPEFIYKAGGKPLDQNFNTLIYNKLTGYT*
Ga0136561_10012796	F037002	N/A	MSYALDTAYSNQVIFLNSNNCNFKSIDGIGSYVYNLQTPIQKPSNTMMLLSITDAQIPNVSPNVTSSNNQISFYIPTFSKYFTITVGDSDGDAVYSADEFINEVNEKILPNALEQFYLYGTYEFSRAKVKWISNHSFQIINTASYPTTCIDLLGFRKDRNNNLQQTEDALLSSTVNPSFHITMPSSVNFTGARYIFVKFKNISVNNLNSRGITDNAMVRIDNNAPSGYMIFYRPSEVQRFIVGKQTISNIEFTLTDTFGDELNIFSNDAQITLKIEYMYKPEMRSFEEGTINYELRKLGKIPKDEETLKDIYNPETNRFEKDQIVGV*
Ga0136561_10012797	F004242	N/A	MAFGTKKPASARIGLKKQAHHVNRLGLKASNLAMSAGAVVALAGPEALPVASALEVAGGAGKAIFGLGSKLV*