Scaffold Ga0136572_1043933

Overview

Basic Information

• Taxon OID: 3300012029
• Scaffold ID: Ga0136572_1043933
• Source Dataset Name: Saline lake microbial communities from Deep lake, Antarctica - Metagenome #83
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 503
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus → unclassified Haloferacalesvirus → Halovirus HSTV-2 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Deep lake
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072891	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136572_10439331	F072891	N/A	EEVAQFVNKTANYDTPTGVSVTVEFDDGTTMNRTWGAVEATPEPTPEQGEPTTTEQGEAEIRDAWAKIAADEWSKFQSMAAEFGVVNMKREPMVDTLADMGVMPGDDPSEDTSEQPEPESFTDLSEDKQDALRAAVETDPSEANFTRAKDLLETGEDYVSLAGECLN