Scaffold Ga0136572_1016038

Overview

Basic Information

• Taxon OID: 3300012029
• Scaffold ID: Ga0136572_1016038
• Source Dataset Name: Saline lake microbial communities from Deep lake, Antarctica - Metagenome #83
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1134
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium 12-65-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Deep lake
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004364	Metagenome	441	Y
F009587	Metagenome	315	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136572_10160382	F004364	N/A	MGDNAMNHTGRPCAAAGMTSYRYAGRIMIGATSTQDALNEADRSLTQGAATVDRLEIWNALTGLYEKVTT*
Ga0136572_10160386	F009587	N/A	MTHLYQLCHNARRMDRHSEAELWARFKAVQPQDACAVTPARPAPHPMPEQID