Scaffold Ga0136609_1027122

Overview

Basic Information

• Taxon OID: 3300012027
• Scaffold ID: Ga0136609_1027122
• Source Dataset Name: Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF 2006 #2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 540
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Deep Lake
• Coordinates
  • Lat. (^o): -68.5627
  • Long. (^o): 78.1882

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089595	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136609_10271221	F089595	N/A	THNNQGDDQVMFHLGVRPNEDMGSPATWGRVDHDYTSLMAAIQSLKAG*