NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136609_1026470

Scaffold Ga0136609_1026470


Overview

Basic Information
Taxon OID3300012027 Open in IMG/M
Scaffold IDGa0136609_1026470 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF 2006 #2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)547
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep Lake
CoordinatesLat. (o)-68.5627Long. (o)78.1882Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020827Metagenome222Y
F058558Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0136609_10264701F020827N/AMKHDIAGWYEIGQQWKLWKDGQIRYFYIDHIHVLESDDPDNIKVRHYLSDETMIDELTVTEGDIEEVINGSNIQPIDK
Ga0136609_10264702F058558N/AARYKTGIQPMNINDKFRHRAFKVVVKTDDHDVAENAIMAGLSSVGVNDDEYRMLWTRDNFNTSSHNHVAAIFIVPTEYMADLPTLVERGNAISINEVELQSVDA*

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