NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120191_10002908

Scaffold Ga0120191_10002908


Overview

Basic Information
Taxon OID3300012022 Open in IMG/M
Scaffold IDGa0120191_10002908 Open in IMG/M
Source Dataset NameTerrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1663
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial → Terrestrial Microbial Communites From A Soil Warming Plot In Okalahoma, Usa

Source Dataset Sampling Location
Location NameUSA: Kessler Farm Field Laboratory (KFFL), Okalahoma
CoordinatesLat. (o)34.975667Long. (o)-97.519Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004741Metagenome / Metatranscriptome425Y
F100771Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0120191_100029082F100771GGAMQLKLGIQEAIPPTTKNSATQYSVFALCNKCGGMHDMAVSVILKDGPVKKQSIAQVYKDGNLPASLTNLSSQSVTCPATGRRSTQKDNHQIFLVPAK*
Ga0120191_100029083F004741N/AVKILIDISPAHYDRLLSELTEESRIYAILKNGVVIHQFEAGYESRTVEILCEKFHARMILAIAEIVCPEAVVEIEEAIRLSRTLH*

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