Scaffold Ga0119869_1018129

Overview

Basic Information

• Taxon OID: 3300012020
• Scaffold ID: Ga0119869_1018129
• Source Dataset Name: Activated sludge microbial communities from Shanghai, China - wastewater treatment plant - Activated sludge
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Tongji University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2496
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Elizabethkingia → Elizabethkingia ursingii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Activated Sludge Microbial Communities From Shanghai, China

Source Dataset Sampling Location

• Location Name: China: Quyang, Shanghai
• Coordinates
  • Lat. (^o): 31.3
  • Long. (^o): 121.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055725	Metagenome / Metatranscriptome	138	Y
F058997	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119869_10181293	F058997	GAG	MIIYKGQQMTVREACALMGIDCDDFMAWCKKFALQNYGYALNYYKRTLKHGKKG*
Ga0119869_10181294	F055725	AGAAGG	MAFFNGEGIDLPTITKLAEAGVSLNSMSKLTGHSRTGIKRALERNKIPFINHVRERFIIVDGVEISLGEACKAKGFSRESMYAWCVKRGLNEQEGFEAYIVYQQSKRTIDKPILTFKNATVIYKKERYTLDAISDKLKLNKQRFEVFMRQNRYAQNAFERYCYMRDYDYL*