Scaffold Ga0119867_1010591

Overview

Basic Information

• Taxon OID: 3300012018
• Scaffold ID: Ga0119867_1010591
• Source Dataset Name: Activated sludge microbial communities from Shanghai, China - membrane bioreactor - Activated sludge (MBR)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Tongji University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3119
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Activated Sludge Microbial Communities From Shanghai, China

Source Dataset Sampling Location

• Location Name: China: Quyang, Shanghai
• Coordinates
  • Lat. (^o): 31.3
  • Long. (^o): 121.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048174	Metagenome / Metatranscriptome	148	Y
F075867	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119867_10105917	F075867	AGG	MNPALKPSSKHFLQYDAATFENEGFKTLNGRISQLALEPRFWSVSVKVITENFEGTEKIKDHFNFKTSERCKLSDLREQVKKEVLDKDDYLPVCTQCLVTARVMM*
Ga0119867_10105919	F048174	GAG	MSDKGQLNNKDVQSHSEVVETLLKGEIERLKEDLDRLHRERDAFSRQCSVMAEENQQWERDSKRLTWMIQNYGRVHFEFNANCYVTFIWKNEFKSTLGSDDTRVEIDRAMEMCK*