Scaffold Ga0153801_1008984

Overview

Basic Information

• Taxon OID: 3300012017
• Scaffold ID: Ga0153801_1008984
• Source Dataset Name: Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1833
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.6244481
  • Long. (^o): -80.9227115
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010236	Metagenome / Metatranscriptome	306	Y
F024783	Metagenome	204	Y
F036672	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153801_10089842	F024783	N/A	MDWGIVLAALITAVGGAMTTLMMVMRKENTQDHARVVNALDMLSGNVDKIGTKLDSHIDWHLKGTTNGETIAGNKVAKPKRNIKAR*
Ga0153801_10089844	F010236	AGAAG	MKKFQDVAGRIVAVFLSSALAIVGGSAVIAPELPIYKSAILAGFAAVATVVQKLAQASLDGNLTMEEINDSFGVKKK*
Ga0153801_10089845	F036672	AGG	MMKLWGEFHALLWTIAASVTTILTLSGAIQRVVIWLTVGALVLHLIGALTKKEESE*