Scaffold Ga0153801_1003268

Overview

Basic Information

• Taxon OID: 3300012017
• Scaffold ID: Ga0153801_1003268
• Source Dataset Name: Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3137
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.6244481
  • Long. (^o): -80.9227115
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015204	Metagenome / Metatranscriptome	256	Y
F046910	Metagenome / Metatranscriptome	150	Y
F065707	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153801_10032683	F015204	AGGAG	MNFTEWWSQLTKFEQRAIGEHNAKFVWEECQKYTLMTLEDACKAQVAYDQGMKDGRERYEVHVAGWVLTPGMQPGMIWISDAGGEGGDFHIHELAEVIGKFYKEKF*
Ga0153801_10032684	F065707	AGGA	MRPAIFSTENPPQPVTCVETLEYINGLRRRIEVQNDQMEQLAAQSQELLGKVQHLTGEVEKLSLDLGIQQGDAGSGWQKVTQ*
Ga0153801_10032685	F046910	AGAAGG	VTPSLQDIVEALGPRQLVQVVILTAGGQKYALIGPVMTCAEITDIEFGELMPMEVAAKMLSGDHKEWLGTGLQ*