Scaffold Ga0153801

Basic Information
Taxon OID	3300012017 Open in IMG/M
Scaffold ID	Ga0153801_1000949 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6415
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location Name	Ontario, Canada
Coordinates	Lat. (^o)	42.6244481	Long. (^o)	-80.9227115	Alt. (m)	Depth (m)	1
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F044903	Metagenome / Metatranscriptome	153	N
F060719	Metagenome	132	N
F075869	Metagenome	118	N
F083690	Metagenome / Metatranscriptome	112	N

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

153

Metagenome

132

Metagenome

118

Metagenome / Metatranscriptome

112

Protein ID	Family	RBS	Sequence
Ga0153801_10009491	F075869	N/A	MRNFILIGLAALTGYYFLGKSQLAAKTKLMFKKLGFANKKFQLVFGVQNPTGQTAKVSAITGEVYLGDKLIADFSSFAEQKIAARSESELKIQASPTIGILQLVSTKGWLKKGLNYTIKGTGNFDGLVVPFNYKANLI*
Ga0153801_100094911	F060719	N/A	MQPQHLKINIQDEISADKLKLAYNKQRSDRARYEQENSVSKSTGQAFQKYYVETKVYYTTANIGSECNEITFINNGTTALVIADVPLQPNQSLRISGNRGEIDTTQYQLSFATPINVGNQLIVIRKL
Ga0153801_10009495	F044903	AGGAG	MGAIGKNFIMDAAGLVAGAAIARVLTSSGKILPNIDAKLKSAAVVAIGAFFPKLVKGAIGQSIGSGMVAAGGLGLLQSTGVLGQIDNAMSIPVSVMAGDDLSVIAGYSEDNLSVIAGMDEEYSF*
Ga0153801_10009499	F083690	N/A	MPEITADKIIGKTLFAKKDLTRLNGSLVKIGTIVAGSPVGEVYSWIQRNGKLYWSFNDFSNKPYYVLHTPDSFKFTGDVKQVIQENKQEKENIQKEQKGSIPFYIEKYGKVILLYGVGAYLIATYLKSRK*

Protein ID

Family

RBS

Sequence

Ga0153801_10009491

N/A

MRNFILIGLAALTGYYFLGKSQLAAKTKLMFKKLGFANKKFQLVFGVQNPTGQTAKVSAITGEVYLGDKLIADFSSFAEQKIAARSESELKIQASPTIGILQLVSTKGWLKKGLNYTIKGTGNFDGLVVPFNYKANLI*

Ga0153801_100094911

N/A

MQPQHLKINIQDEISADKLKLAYNKQRSDRARYEQENSVSKSTGQAFQKYYVETKVYYTTANIGSECNEITFINNGTTALVIADVPLQPNQSLRISGNRGEIDTTQYQLSFATPINVGNQLIVIRKL

Ga0153801_10009495

AGGAG

MGAIGKNFIMDAAGLVAGAAIARVLTSSGKILPNIDAKLKSAAVVAIGAFFPKLVKGAIGQSIGSGMVAAGGLGLLQSTGVLGQIDNAMSIPVSVMAGDDLSVIAGYSEDNLSVIAGMDEEYSF*

Ga0153801_10009499

N/A

MPEITADKIIGKTLFAKKDLTRLNGSLVKIGTIVAGSPVGEVYSWIQRNGKLYWSFNDFSNKPYYVLHTPDSFKFTGDVKQVIQENKQEKENIQKEQKGSIPFYIEKYGKVILLYGVGAYLIATYLKSRK*

NMPFamsDB