Scaffold Ga0120187_1040315

Overview

Basic Information

• Taxon OID: 3300012015
• Scaffold ID: Ga0120187_1040315
• Source Dataset Name: Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C3.rep1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 582
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial → Terrestrial Microbial Communites From A Soil Warming Plot In Okalahoma, Usa

Source Dataset Sampling Location

• Location Name: USA: Kessler Farm Field Laboratory (KFFL), Okalahoma
• Coordinates
  • Lat. (^o): 34.975667
  • Long. (^o): -97.519
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008581	Metagenome / Metatranscriptome	331	Y
F020617	Metagenome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120187_10403151	F008581	GGAGG	MANDVRQMPAQVGATYKDAVDNIIFLKRQQWLATNYALILYAAIFVISAHYFSRTDFARNWLGVLTIVTFLIH*
Ga0120187_10403152	F020617	N/A	MHLFQRAIEKFRDRLTWIYRTYFSADERAGLDLQLEPRSYWHQPEVFVGLIALSFVGALLTAIYLWSVR*