Scaffold Ga0153805_1020141

Overview

Basic Information

• Taxon OID: 3300012013
• Scaffold ID: Ga0153805_1020141
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1137
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.844722
  • Long. (^o): -79.573889

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002387	Metagenome / Metatranscriptome	565	Y
F007468	Metagenome / Metatranscriptome	350	Y
F033037	Metagenome / Metatranscriptome	178	Y
F050227	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153805_10201411	F050227	N/A	EYDNQCRDCDSYNTLDYCEDECGEICSSCNYLGEADLEAVKECQTHKIYLDSEHVPTYRMDKING*
Ga0153805_10201412	F002387	GGA	MASFLEDVNQMVIDACYQDIAEQLLDDWINSNLDEGQYYADKQFAEMSGDKFIQDEFNKFYNLKEGDEDYLC*
Ga0153805_10201414	F007468	GGAGG	LTTQTKSSKFIEYMKIHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVALDIMATSERYNNE*
Ga0153805_10201416	F033037	GGAG	MKPQDKDKLNECLKILDTTDLGLSLVWLWTWSTINNIFE