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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012013 Open in IMG/M |
| Scaffold ID | Ga0153805_1006849 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface Ice |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1991 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 42.844722 | Long. (o) | -79.573889 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003265 | Metagenome / Metatranscriptome | 496 | Y |
| F004432 | Metagenome / Metatranscriptome | 438 | Y |
| F008183 | Metagenome / Metatranscriptome | 337 | Y |
| F050321 | Metagenome / Metatranscriptome | 145 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0153805_10068491 | F004432 | GAG | MVTAKKTPAKTPTKAPAKVASVKRRTPRPKAEVVAPTSKPVESPKTDVIGRVTDLIKWVDSPFKLFTVILLSFLAFAGYFAWDSRQVILQAIQNQDHMPQLVKQDDLVDPAKSLLKDVDGLIVLVHKANLATNSRTTVLALNADGSREKKIEGTITSLFNASADRNAAMVAMLNNEVLCEEFNPSSKVGEWGTKQGVKFMCRGSI |
| Ga0153805_10068492 | F050321 | AGG | MITLNKWYPLVQPTHTATQLAFDKAVEKVQEDYRLAYECLQQVKKTQDLEVELYNKRGRQNTIELGSFEDRRRFAIFV* |
| Ga0153805_10068493 | F003265 | GGA | MRLFLFLLLLLLSKATAKESCIVSEFYGQSWLGNPTERHQRLSEWLTTNGNHCSSVQLVAIWNNLAMWAGVADSAELRGKVLYFYARAVEREKK* |
| Ga0153805_10068494 | F008183 | AGG | MLETDVMADSNEIDLVKYGVLWQKVQDMDKKMDKVERQLDELMALANKGRGGLWFGMTIVSGVSAVVGYLLNYWKH* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |