Scaffold Ga0153805_1001780

Overview

Basic Information

• Taxon OID: 3300012013
• Scaffold ID: Ga0153805_1001780
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4177
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.844722
  • Long. (^o): -79.573889

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019635	Metagenome / Metatranscriptome	228	Y
F031455	Metagenome / Metatranscriptome	182	Y
F081253	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153805_10017803	F019635	GGA	MAQIKIYIDGDTEQPTPQAEPTPDLQSEIDRINRTLSDVMRRIAKIESDVRGLRLRLIEDDAEGQVP*
Ga0153805_10017804	F081253	GGAGG	MSLIQTPEQLANAIRNDPQHVAECLHRINRFGGQAVGCSVLQHSLAVYDRLAGWPASARLWGLLHDCHEILTGDVVKPWLPYGLTQKQNAIDQELRDILGITLSTDDAIAVERADVWRGACEFQDVHAGRPVYQHESPVADWVDSVRALLQEVTR*
Ga0153805_10017805	F031455	AGGAGG	VRLHPTIEQHRLHKLGVGKSVLLKIPREQFTPLRRVIAFFNECTDDGTALRTKIGPDGITVSRREIVRIADSPDWRVGRSKPFACTDLLSLEHAVARANEAAKQLGRGYRFRVVCEDGKTHVLKTLCRCRCVIHRQEQYLRIVGMIRRMGVDCVGRVDNVELRDVRRVQRNFKHSLRFRAKQIADNTFQIRRTR*