Scaffold Ga0153799_1025276

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1025276
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1169
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069436	Metagenome	124	Y
F075836	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_10252762	F075836	GGAG	VRFLIVLLIALAGCVATLPDDATISADLACETARAVVLERARPDVPDDKPKPGDKCPNCEGRGYVGDGTVKVKCQPCDGTGRVK*
Ga0153799_10252764	F069436	AGGAGG	VTEEAKHTMLGIMERWGFPTLVALGLAFFIRQDLLLPLLEEHRLTLKEVRETQREIADAIGDQTRLLLSIQSGKPVGGLRTVDV