Scaffold Ga0153799_1012992

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1012992
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1781
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006463	Metagenome / Metatranscriptome	372	N
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_10129924	F006463	N/A	MNKGTIYEQMDWWQRQWRGSFDLHLYLEICRIKKNENQIQKPMKRFKATFKTYAYVGAPMKLETRIVEAYDFQHVKNLIQKNDDIIVEIKQIEK*
Ga0153799_10129925	F009958	N/A	MENRNLGVWNRGWELNYEFLGWQYSIAGTWEFNDYDEVSEFAFIELDVDVSEKWIIETDDHLQPHVLGVRLLEDLRLEMQEIINSDLANYDFWEWKVSNDDSNYNFYHEL*
Ga0153799_10129926	F034772	N/A	MKNLINYFTPTTNEHKSFLRHFLGTLTAFIVLGGIFYCLMCLKTL*
Ga0153799_10129928	F009004	N/A	MKKRNEILDFLELKQQEDKHSTNQLHLIIQTLCTFLDDDQLQEIENLFNQFKN*