Scaffold Ga0153799_1009600

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1009600
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2177
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014590	Metagenome	261	Y
F055298	Metagenome / Metatranscriptome	139	Y
F068766	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_10096001	F055298	N/A	RAVGVSTEDLTSFIESFASLRAMRVKGVGHDQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCD*
Ga0153799_10096004	F014590	GGAGG	VRTGHLQLVTQEHSATTSNRSSVCSPYGPVRAGLTTSQITNEARLTELLNSLESVVASLNYKSFTVYDTLVIATENLRVALSNIATDEAGTDTL*
Ga0153799_10096006	F068766	GAGG	MTTEDNVVGFHPKNKLVNFYEVATKEGNAVWGGEDPHSAVGWLRRSPMNSRLLVSCWEAGEEDARLIIEPIDITKIVHAVLAGTQ*