Basic Information | |
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Taxon OID | 3300012012 Open in IMG/M |
Scaffold ID | Ga0153799_1007332 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2587 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Ontario, Canada | |||||||
Coordinates | Lat. (o) | 42.581667 | Long. (o) | -79.9225 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003659 | Metagenome / Metatranscriptome | 474 | Y |
F026828 | Metagenome | 196 | Y |
F030991 | Metagenome / Metatranscriptome | 183 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0153799_10073321 | F030991 | N/A | MVLKYLGCDKKYFRYELYDGDRMELYVETKLSARATAKLLFRNFGIEHIVLKIYNRTYGLKT* |
Ga0153799_10073323 | F003659 | N/A | MPQTLTAADVVGRYLIAKKDVPVYDAPFGTRIGTIKKGNSTPEVYSYLVRQGQVFWVFDYTIPGQTPSAYYALQSPDAFSLSSVPGNVAIAPNVLPSVDVFPAGGIKKYAIFGALGLLALLILKK* |
Ga0153799_10073326 | F026828 | N/A | MNEELIANAIAFLAGWVLKRPDFVQKIISKLFTKKVK* |
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