Scaffold Ga0153799_1007098

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1007098
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2639
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006743	Metagenome / Metatranscriptome	365	Y
F051794	Metagenome	143	N
F078660	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_10070982	F006743	GGAGG	VRTENWQRNTRGLRLVGEGESGSASTFFGPVRAGLTTSHRTQLLVLSELLSSLESKVETLESRYLEVLNILTDVMAHLVRLNSLLLNADTTKLKDS*
Ga0153799_10070983	F051794	GGAGG	MKTIDKRRAYSEKRAVWLRNYQRARARALTRLAQQYPDQYKEILEQERLADESMAKTWLDITGATSISSSLGVLTDRNNDTSRSEQANGDEQDEGNVGGEG*
Ga0153799_10070985	F078660	AGGAG	MKPVNFYEVMDHKAEVEWGGASVSEAITWFRRGLDRSILVSVWDEQSEDDFKLITDKIDVTALVLATITSEREKA*