Scaffold Ga0153799_1004947

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1004947
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3311
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004670	Metagenome	428	Y
F034929	Metagenome	173	N
F073543	Metagenome	120	N
F076084	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_10049471	F076084	N/A	TGYAADLKYKDEAQARIIWDWFLANSKALGLCEMHWYAYGEYGAGYRCSRGEGKAGVKIFTATDNAGSYQGSPNWLHIELAKQTPEHFEQQFRALKELPKTV*
Ga0153799_10049472	F004670	AGGA	MTYTDLPLFRATDPETSRQVSPLRVGTHRAILLQQYYYATLGLTDEEAGMRAALAGHEIKGYWKRCSDLRTLGLIEDLGIRRALTSGSQGIVCGITQAGLDMVRGYA*
Ga0153799_10049473	F034929	N/A	MGLLQAPKPLLETLMLPTWGYIALRSKDKKIMVQVFTDLTTGLIEYTQVCTRAESWHLWGPPTEVERVD*
Ga0153799_10049475	F073543	AGG	METSTGELIAKLTNLSNKLEGEMRFVESDLVLEAVAYMHSMSKMAEVIRHANYTETRSQLNNVVRFITGTDNE*