Scaffold Ga0153799_1003357

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1003357
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4156
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F012108	Metagenome / Metatranscriptome	283	Y
F040587	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_100335711	F012108	AGG	MISIQVTVAEAIAIANTAGNDLHDRIVNALEIALGVNQRRIVTITGGMNLDNRIPCIRAIRLATGWGLKESKDWTDYMVGGWKYDKFVPATQGVKQSLTLKTPEIAEALLRDLVGLGCEGYLS*
Ga0153799_10033574	F040587	AGGAG	MIQWVGVLIALFGLAYTGVKDYQKGEIKLPTIQKPLTKTVYPIQYCLMAYDPNLEKVFYLHENGQWYDYAPQQRRYASSP*
Ga0153799_10033577	F000325	AGGAG	MKTANGNDKLGKENCIVVSRPVGDTCPSDCDFLGNGCYAEDLENIYPGVRPAGMQNLITEKNRIRAMLVDAAKKNKDVRWHERGDFFKYGELDTEYVDNVLWACESILSSGGSLPTMWAYTHIYDARLSTELGKYINMYASIHNGEDMKQAKAAGFKHFAWCDSDTKIAPKRPRSKAKADAWRAALPKLIVLEGEKFITCPEIRRGRGVVTCTQTKNSVHCDLCVRGLANVLFPSH*