Scaffold Ga0153799_1003299

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1003299
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4204
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F012433	Metagenome / Metatranscriptome	280	N
F019290	Metagenome	230	Y
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_10032994	F090073	AGG	MSDILDDELNGSFVKPGRDYKGEAIADYTEGSRLLMLQCKEPQDSSVYFIWAFLYIHILIAKNRKEAIKLAWNKDEFRDKLLGWIEDKTEEDRTIATNIVSEMIEEASRAKVSVVLSGNIASGND*
Ga0153799_10032995	F019290	N/A	MERSSYWGTTNIKVASAVAAFGGTLRQSDPVTHIVREDGSKQITFWFNSGGIGNTAKKEMEAKWSEMTSDQEAPIRYVRAALENRETLLGLVKRAEPIQIIKRGGQTLLVPTNAKPELKRAILKAI*
Ga0153799_10032996	F006138	GAGG	MPAVTVGQQNLVFGLTTETIGLVQSFSETRNVEKNEVRNASGDVVGIGYYNPTTAYSLSVAITGPNTSLTVGGSFASLANATTVGTCRIDSIALNKTNTGFVTIDISATGYPNVS*
Ga0153799_10032997	F012433	GAG	MSADQVADLRERLARIEERQVGLISILERHTSEIAEWTGRMNGKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELIKVRVLPR*