Scaffold Ga0153799_1002834

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1002834
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4591
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035766	Metagenome	171	Y
F050317	Metagenome	145	N
F078709	Metagenome	116	N
F092046	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_100283410	F092046	N/A	MITLTRDQTTNRNGSFSLVVAGGKKFIVPRWIEVPMNTEMEDICVEAKPELPRVEPQEDKEWTFIGSKGNKYTVARNGGAFTCTCPASMFQKFKDCKHITEAKSAV*
Ga0153799_10028343	F035766	N/A	MTTTQKFKVLGVEQGITITRPFNKEMFDHNDNVRWMQNEAVIAALEALKGSEDEELIEKATKACSGYGYGDGYDYNDMIDDAIRNVETSANNWMKDEIWPDFLRLDLVSPLNVDYVGYKKL*
Ga0153799_10028345	F050317	AGGCGG	MSKQKEKYFIVAAGGYLPKPVVEEIIVDEMEMDKEFDDFDEYKTYMLQEAAAEFDQRFAKSIILTEAQAKEISVYLTN*
Ga0153799_10028346	F078709	N/A	MNTDLLETTLVVSNVFNGERREKTILFINEELAVKKAERISMENPDCIVSISSRKGAFFHFFKPLNMSKELDLVSEGKMDTVEYILKWTGLNANLQSEVKKPRRQKPGQAPSIENFQQAAGV*