Scaffold Ga0153799_1002385

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1002385
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5090
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063632	Metagenome	129	N
F065720	Metagenome / Metatranscriptome	127	Y
F068565	Metagenome / Metatranscriptome	124	N
F101045	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_100238512	F101045	N/A	MLSGGVTLNVFTHLQDYTLINSSIENIPEDIKIRIWVRDNFDKTKLRRPCEVFFVPGINLSWIQKMRMCARFAREAQEAWFGYAHDDATISREDFSKMLEARKTAGDNIYWIVTNNPKHPEINADIYALFNTKNYWAIGGHDEGFHIYYADIDFHIRQAHNGKSQLGVCTPSTTHIGSAVLKRLEGLEAELYKLQLVKDKDYFKIKHPTVDV*
Ga0153799_10023852	F068565	N/A	MLTERTIFSLCEVLPNTTLQVRLSDQIVDGEVVKASTFRRYCLNPGSDLTGQPEQVVAIAGAVWTPAAVAAYAASQTPSPTIQ*
Ga0153799_10023856	F063632	N/A	MKTLIEFLGNFFKNNGHLRGALYFSIAALTPMAASFVEWASQDGPKNWYEVIALALGSMISGLTAXXXVLGSLISGLTAVRAYLDTHLSNENKANE*
Ga0153799_10023858	F065720	AGGA	MSFLSDLVIKLLRWFYELSQKDLTSQDAQKDDKLKQNLLARIDARERELLVESNLRAERTASALSRVDKSPRVGFRFKRPQGKITKQDNNS*