Scaffold Ga0153799_1000863

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1000863
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9179
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F012113	Metagenome / Metatranscriptome	283	Y
F029043	Metagenome	189	Y
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_100086313	F090073	GAGG	MSDILNEELNATFVRPGRDFKGQPLAEYTEGSRLLMIQAKEKEDSPVYFVWAFLYLHILLAKNRKEAIKLAWDKEAFKESLFDWVSDKTQEDRDIATNIVSSIIEEASKARVSIISSGGEGFSMGNE*
Ga0153799_100086315	F006138	GAGG	MPATTVGQSGLVFGLTAETIGLVQSFSETRNIEKNEVRNASGDITGIGYYNPTTAYSLSVAITGASTSLTVGGAFSTLANASTVGTVRIDSLTINKSNSAFVTLDVSATGYPNVS*
Ga0153799_100086317	F029043	GGGGG	MSKDDQACQALQYLLDEGFIALGYIDGKPAVHLTTSLADAQKAILGLAKDSADWWK*
Ga0153799_10008634	F012113	N/A	MEQILSFIQSQDVFAWVGALVALLSAVIAVASLIPGDEPEATLTKIVSFLSKFSKK*