Scaffold Ga0153799_1000683

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1000683
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10562
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (24.14%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014593	Metagenome / Metatranscriptome	261	Y
F016783	Metagenome / Metatranscriptome	244	Y
F017988	Metagenome / Metatranscriptome	237	Y
F020142	Metagenome / Metatranscriptome	225	Y
F026002	Metagenome	199	N
F043294	Metagenome / Metatranscriptome	156	Y
F044369	Metagenome / Metatranscriptome	154	Y
F068435	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_100068316	F020142	N/A	MRRGPQRIPIPGKKWNEKFIHKNKTWHVVHKQDEITYAICELRNGVVGGIVERFYI*
Ga0153799_100068320	F017988	N/A	MKFLELTGFGNNHKHFISLRSISDIEFLPNYTSILLNNGHIVNVIENQKQITDIINYHQSEIVSVEYLDDLEAQITAYEEMNADRFVTGKDMELPF*
Ga0153799_100068324	F044369	N/A	MSKIEHILQKAYKKGIYNETMSLAQNIKNENLKIELADRYEIAYEQAKKSLQKHSTNPNP
Ga0153799_100068325	F043294	N/A	MATAMAITSIILALTMGFLLYLEIHKINKQVLEIQEQIHFLSNEVNKLKQQAKKKYYANKKQVIQG*
Ga0153799_100068326	F016783	N/A	MKNILLTIGVALVISACSTANFATHPLSVTPTISRQALIYDNHVVIVTKTKMSVEDYNKIIATTVKNKEERIK*
Ga0153799_100068328	F068435	N/A	MNKFKYLQLIGTITVFSPIILVVLSVLIFGFGTPTTNEPVIQVVDIKKVDTVSIAQKVEPVVVKPTPIVVKPSPIIKDTVKPVVESLDTAK*
Ga0153799_10006833	F026002	N/A	MEQKFKLEFPLDLEIKYDHPQELLELASRPEFITFMFENAIAAVKQSIRKNKSECVMFSIENYNVKVAIKKEHYKTFLNKAIKHYEALEEYATCKELVTLKSRL*
Ga0153799_10006835	F014593	N/A	MDPKKDFKKFFQKVFDTPVDIQGEILTSEELTRKNFIIFVDNYRKAVIRSQEMQEKFGLDLWSWEDLFAKSLEGIIYYTFEEEVADVILWYIYEHYLAEDPEDKIINFGEEQFMIETSEDLYDLICLVEE*