Scaffold Ga0153799_1000614

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1000614
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11382
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (7.69%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010462	Metagenome / Metatranscriptome	303	Y
F022861	Metagenome / Metatranscriptome	212	Y
F030735	Metagenome / Metatranscriptome	184	Y
F042298	Metagenome / Metatranscriptome	158	Y
F096923	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_100061411	F096923	N/A	MKTIAIVVLWFVFIGVLATFVSCGSTHQCDAYGQTKQVETKTVSK*
Ga0153799_100061413	F030735	GGA	MKIVFLWYLMTGTVKYQQTMDGHKQYALFFKDGKVVDYAYKAEILEYIKSRTFEYDETLELKK*
Ga0153799_100061416	F010462	N/A	MLYQLPNGKVVHLSIEEYLELTDLDIQFLMSIDYGEHIIDPFTGSAVEKNTREKYIDTDFLPLEDYDLNDMPSDDLPFDDIIDLEDPLEN*
Ga0153799_100061422	F022861	AGTAG	MRAICIDASNKPSKVPESEWVIEGEVYTITRVVRMGLQDNKFGVLLKEVKLSAKSFPYELYDAERFLPIDLLSQVLEETKETVKEADLELI*
Ga0153799_100061424	F042298	N/A	MGRMKEAYIQIMNNNNGIPEDMTLADFLKMKELNIYNWQEYERAKERARLQSNQQKDLGEASEDSEGESIRRKENN*