Scaffold Ga0153799_1000542

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1000542
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12186
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073537	Metagenome / Metatranscriptome	120	Y
F085706	Metagenome / Metatranscriptome	111	N
F093857	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_100054213	F093857	N/A	LKEEKQTVYLCQKILDTLDTHRSLFDGYQRQPDIANNLQKVLKPFHAKVKVHTNKTLDRGDVAIGGEFHYDKTYQPIHLHLHFSPKAQGKFQWTDKWEHFRFLVAQVLQHELIHQHQCQFPEHAEGNYFDMNIDDKDIHYFSELDEIDAFGHDIAMEIRYYYPKEDPYQVLKTVSRRKYIHSYKYYTNTFKGLDWTCIRKRLIKKANNWIPFTHI*
Ga0153799_100054219	F085706	AGGA	MPQPNFEYKKALALGDKAFEALVTTKILEIVPEATATWTNYTLFLKTSDGNMQRVTTYLASTYGMDNIDINQVGEEYAIDFM*
Ga0153799_100054226	F073537	AGGA	MPGVYKLKNCKLCDKEHRRRGPYCGQSCASKDKEPTEAMREGMRRVVTEYNQTPEAAAKRRQIGTSLATMNGEDYAVEIPTIHDLDELPPGYDHGEGW*