Scaffold Ga0153799_1000525

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1000525
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12395
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (71.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F001176	Metagenome / Metatranscriptome	756	Y
F004666	Metagenome / Metatranscriptome	428	Y
F014250	Metagenome / Metatranscriptome	264	Y
F018349	Metagenome / Metatranscriptome	235	Y
F028166	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_100052512	F004666	AGGA	MATKREYLVSKGITVGRRGRFSSAAKQALSEAEKNGIKFSAEVKQAKN*
Ga0153799_100052515	F014250	GAGG	MMNSTYLPERLQKLIDMGESGTNIMHGQLKNLMLQAEEQMLQAQAEEDRTGEAMDSMERKYWEGHLDALTGVYALTYQLAFAIDERMKKNEN*
Ga0153799_100052520	F000450	AGGA	MGDRANFGFVQPNGNTIVLYGHWSGYQMLANLAEAVAKAQPRWSDPSYATRITISQMIGDGWSMENGWGLHVNEIGDNEHKIAIVDFNQMTFSLHEEDSHYNLNNKVRGMKNEALFTMDLRAFVEKYTDVAILV*
Ga0153799_100052522	F018349	AGGAGG	MDYKEGFQDGVQFTREVVIANIRKWAETHEDGVALDWVADRIEFGTLDNDLG*
Ga0153799_10005256	F028166	AGGAG	MSDGINLTGFNETGEQSGSNSLDLNPTGQEPKPAFPAKDVSSQDGAGLGNGGK*
Ga0153799_10005257	F001176	GAG	MSNGTGMDSPPTDQPSGAVTAAEVGRKKPSQGRFKSGIQEKRPIKVDRNRHGIRRETTIVPKKTRPKKV*