Scaffold Ga0153799

Basic Information
Taxon OID	3300012012 Open in IMG/M
Scaffold ID	Ga0153799_1000380 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012012 Open in IMG/M

Scaffold ID

Ga0153799_1000380 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14708
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

14708

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (83.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location Name	Ontario, Canada
Coordinates	Lat. (^o)	42.581667	Long. (^o)	-79.9225	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Ontario, Canada

Coordinates

Lat. (^o)

42.581667

Long. (^o)

-79.9225

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006017	Metagenome / Metatranscriptome	383	N
F011388	Metagenome	291	Y
F027501	Metagenome / Metatranscriptome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_100038010	F027501	AGGAG	MYSDIKAGIRWIIDNTGVDEALIEFFRTFVTVSISVALGLGIPLLDISGGDFRTVLSAGLASGLQVLIKFLDPKNTAFGIKEKSPEDKAAAEKQFDI*
Ga0153799_100038011	F006017	AGGA	MKFKVKSQLDHVEKGGILDDCGPSSTAAAVAWASKYTVDPSAGDGIKAKSKATGFVEKEGVSDNGSSLGDLIKTAKELGAKARYAKSWDDVVLSAHRGAGLIVWVQQAVDYPPVEVSEWHKKWQNYWLKKDKKHISDGYGHMTAGGWDAVDGWQWACPTRKGKGNEKFGVVVTEEQLKQIAASKKKITGGAAHKHVVIVEWK*
Ga0153799_10003806	F011388	GGA	MAVVCLHHALYKLGLSNPQAGDPESYRKWLDTPYEWYHVGIQQETAELVFREIETILSSAHPAQRGRGCAMIKELGKVVDTQKKYRGEYAWVKFNPIVGGASIHFRTTQDRAKALLGKDMNGVSFDEAAFEPHLVMIYQEVLNLRRLSTGGPLHFIGTPSEGINDYAELWERGNPENPAKDEKFISFRLSTRDNIGYGLTQDNFDDVVRQQAEYLIPQNIDGFFIEARDAFFWSQSILASYKVLEDDLKPTKNHRYVQGVDPGISHDATWAITIDITERGKLRGVRVRKRGGKQSISAVVNMVREGHLLYSQDGAFCTTIVDSTGLGGRLFQQEFSMIRPLRGFDFGGTKSKKVELLNDLKAVIDKGQIEFPMGGPWDELKRQLLIYKLDDKKLEQDAVMALAIAVRHALRNPEKGLENPTFTYYGASD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153799_1000380

Overview

Ecosystem & Geography

Associated Families

Sequences